Code associated with the 2018 Nature Communications publication “Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment” by Glen et al.
https://github.com/kemplab/mESC-Intercellular-Differentiation
Model and data files associated with the 2018 PLoS One publication “Oscillatory IL-2 stimulus reveals pertinent signaling timescales of T cell responsiveness” by Kippner & Kemp.
https://simtk.org/projects/il2waves
Model files associated with the 2016 PLoS One publication “Calcium dynamics of ex vivo long-term cultured CD8+ T cells are regulated by changes in redox metabolism” by Rivet*, Kniss-James* et al.
https://simtk.org/projects/tcell-aging
Model files associated with the 2016 PLoS Computational Biology publication “Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay” by Prasanphanich et al.
https://simtk.org/projects/abcg2-sp
Model and data files associated with the 2015 PLoS Computational Biology publication ” Dynamic Redox Regulation of IL-4 Signaling ” by Dwivedi et al.
https://simtk.org/projects/il4_redox
BioModel database entry for the 2006 Biophysical Journal publication “Dynamics of muscle glycogenolysis modeled with pH time course computation and pH-dependent reaction equilibria and enzyme kinetics.” by Vinnakota*, Kemp*, & Kushmerick. SBML files not verified for accuracy.
https://www.ebi.ac.uk/biomodels/MODEL1006230077
https://www.ebi.ac.uk/biomodels/MODEL1006230053
https://www.ebi.ac.uk/biomodels/MODEL1006230049
BioModel database entry for the 2002 Annals of Biomedical Engineering publication “A Computational Model for Glyogenolysis in Skeletal Muscle” by Lambeth & Kushmerick. SBML file not verified for accuracy.